Load Libraries

Load Mothur OTU Data

Sample Sequencing Read Counts

Scale Reads for Between Sample Diversity Analysis

How linked are the diversities of the fractions?

How linked are the diversities of the fractions?

Is there a relationship between diversity and productivity?

For total production?

D1 Diversity with Total Production Analysis

D2 Diversity with Total Production Analysis

Is there a relationship between HNA cells per uL and Total Production?

Is there a relationship between diversity and fractionated bacterial production?

## 
## Call:
## lm(formula = frac_bacprod ~ D2, data = wholeparticle_2015_df)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -7.2971 -2.1906 -0.2354  1.3639  7.6078 
## 
## Coefficients:
##             Estimate Std. Error t value Pr(>|t|)    
## (Intercept)  0.02044    2.33018   0.009 0.993173    
## D2           0.26298    0.05084   5.173 0.000417 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 4.517 on 10 degrees of freedom
## Multiple R-squared:  0.7279, Adjusted R-squared:  0.7007 
## F-statistic: 26.76 on 1 and 10 DF,  p-value: 0.0004174
## Error in eval(expr, envir, enclos): could not find function "rlm"
## Error in summary(rlm_part_otu_D2_stats): object 'rlm_part_otu_D2_stats' not found
## Error in car::Anova(rlm_part_otu_D2_stats): object 'rlm_part_otu_D2_stats' not found

Stacked Bar plots for taxonomic structure

OTU Phylum Stacked Bar

Environmental Conditions

Phylum production analysis

High vs Low nucleic acid bacteria

Muskegon Lake Only

Calculate the Absolute abundances!

HNA VS LNA