Load Libraries
Load Mothur OTU Data
Scale Reads for Between Sample Diversity Analysis


How linked are the diversities of the fractions?

How linked are the diversities of the fractions?

Is there a relationship between diversity and productivity?
For total production?
D1 Diversity with Total Production Analysis

D2 Diversity with Total Production Analysis


Is there a relationship between HNA cells per uL and Total Production?

Is there a relationship between diversity and fractionated bacterial production?
##
## Call:
## lm(formula = frac_bacprod ~ D2, data = wholeparticle_2015_df)
##
## Residuals:
## Min 1Q Median 3Q Max
## -7.2971 -2.1906 -0.2354 1.3639 7.6078
##
## Coefficients:
## Estimate Std. Error t value Pr(>|t|)
## (Intercept) 0.02044 2.33018 0.009 0.993173
## D2 0.26298 0.05084 5.173 0.000417 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Residual standard error: 4.517 on 10 degrees of freedom
## Multiple R-squared: 0.7279, Adjusted R-squared: 0.7007
## F-statistic: 26.76 on 1 and 10 DF, p-value: 0.0004174
## Error in eval(expr, envir, enclos): could not find function "rlm"
## Error in summary(rlm_part_otu_D2_stats): object 'rlm_part_otu_D2_stats' not found
## Error in car::Anova(rlm_part_otu_D2_stats): object 'rlm_part_otu_D2_stats' not found


Stacked Bar plots for taxonomic structure
OTU Phylum Stacked Bar
Environmental Conditions
Phylum production analysis
High vs Low nucleic acid bacteria
Muskegon Lake Only
Calculate the Absolute abundances!
HNA VS LNA